Peer-reviewed Articles:
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Severson M*, Samonds JM*, Barr C, Priebe NJ. The role of inhibitory neuronal subclasses in stereo matching. (under revision, Severson dissertation)
Brown TC, Barr C, Antin M, Nguyen V, McGee AW, Samonds JM. Degraded mapping of disparity tuning in visual cortex explains deficits in binocular depth perception. Biorxiv preprint (under revision)
Li B*, Samonds JM*, Chen Y, Tailefumier T, Priebe NJ, Seidemann E. Fluctuating internal states mediate neural-behavioral covariations in V1. Research Square preprint (under revision).
Samonds JM, Szinte M, Barr C, Montagnini A, Masson GS, Priebe NJ. Mammals achieve common neural coverage of visual scenes using distinct sampling behaviors. eNeuro 11(2): 1–13, 2023.
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Boone HC*, Samonds JM*, Crouse E, Barr C, Priebe NJ, McGee AW. Natural binocular depth discrimination behavior in mice explained by visual cortical activity. Curr Biol 31:2191-2198, 2021.
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Samonds JM, Choi V, Priebe NJ. Mice discriminate stereoscopic surfaces without fixating in depth.
J Neurosci 39(41):8024-8037, 2019.
*Hot Topic, SFN 2019
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Samonds JM, Lieberman S, Priebe NJ. Motion discrimination and the motion aftereffect in mouse vision.
eNeuro 5(6) e0065-18.2018 1–12, 2018.
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Samonds JM, Geisler WS, Priebe NJ. Natural image and receptive field statistics predict saccade sizes.
Nature Neurosci 21:1591–1599, 2018. *Reviewed by the Faculty of 1000
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Samonds JM, Lee TS, Kuhlmann S. Nonuniform surround suppression of visual responses in mouse V1.
J Neurophysiol 118(6):3282-3292, 2017.
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Samonds JM, Tyler CW, Lee TS. Evidence of stereoscopic surface disambiguation in the responses of V1 neurons.
Cereb Cortex 27(3):2260-2275, 2017.
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Zhang Y, Li X, Samonds JM, Poole B, Lee TS. Relating functional connectivity in V1 neural circuits and 3D natural scenes using Boltzmann machines.
Vision Res 120:121-131, 2016.
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Samonds JM, Potetz BR, Lee TS. Sample skewness as a statistical measurement of neuronal tuning sharpness.
Neural Comp 26(5):860-906, 2014.
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Samonds JM, Potetz BR, Tyler CW, Lee TS. Recurrent connectivity can account for the dynamics of disparity processing in V1.
J Neurosci 33(7):2934-294, 2013.
*Reviewed by Read J, Allenmark F. Visual perception: one world from two eyes. Curr Biol 23(11):R483-R486, 2013.
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Samonds JM, Potetz BR, Lee TS. Relative luminance and binocular disparity preferences are correlated in macaque V1, matching natural scene statistics. Proc Nat Acad Sci USA 109(16):6313-6318, 2012.
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Samonds JM, Potetz BR, Lee TS. Cooperative and competitive interactions facilitate stereo computations in macaque primary visual cortex.
J Neurosci 29(50):15780-15795, 2009.
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Samonds JM, Potetz BR, Lee TS. Neurophysiological Evidence of Cooperative Mechanisms for Stereo Computation.
Advances in Neural Information Processing Systems 19, MIT Press, 2007.
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Samonds JM, Zhou Z, Bernard MR, Bonds AB. Synchronous activity in cat visual cortex encodes collinear and cocircular contours.
J Neurophysiol 95(4):2602-2616, 2006. *Reviewed by the Faculty of 1000
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Samonds JM, Bonds AB. Gamma oscillation maintains stimulus structure-dependent synchronization in cat visual cortex.
J Neurophysiol 93(1):223-236, 2005.
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Samonds JM, Bonds AB. Real-time visualization of neural synchrony for identifying coordinated cell assemblies.
J Neurosci Meth 139(1):51-60, 2004.
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Samonds JM, Bonds AB. From another angle: Differences in cortical coding between fine and coarse discrimination of orientation.
J Neurophysiol 91(3):1193-1202, 2004.
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Samonds JM, Allison JD, Brown HA, Bonds AB. Cooperative synchronized assemblies enhance orientation discrimination.
Proc Nat Acad Sci USA 101(17):6722-6727, 2004.
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Samonds JM, Allison JD, Brown HA, Bonds AB. Cooperation between Area 17 neuron pairs enhances fine discrimination of orientation.
J Neurosci 23(6):2416-2425, 2003. *Reviewed by the Faculty of 1000
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Brown HA, Allison JD, Samonds JM, Bonds AB. Nonlocal origin of response suppression outside of the classical receptive field in Area 17 of the cat.
Vis Neurosci 20(1):85-96, 2003.
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Reviews and Commentary:
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Rosenberg A, Bridge H, Connor CE, Samonds JM, Tanabe S, Krug K. The Richness of Vision in the Mammalian Brain: Neural Codes for Visual Perception and Behavior in Three Dimensions. J Neurosci (in press), 2025.
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Kelly RC, Smith MA, Samonds JM, Kohn A, Bonds AB, Movshon JA, Lee TS. Comparison of recordings from microelectrode arrays and single electrodes in visual cortex.
J Neurosci 27(2):261-264, 2007.
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Samonds JM. Feature configuration modulates effective connectivity.
J Neurosci 26(14):3621-3623, 2006.
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Samonds JM and Bonds AB. Cooperative and temporally structured information in the visual cortex.
Signal Processing, 85(11):2124-2136, 2005.
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Book Chapters:
Samonds JM, Priebe NJ. The Primary Visual Cortex,
In The Senses: A Comprehensive Reference, second edition, Ed. Bernd Fritzsch, Elsevier, 2020.
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Samonds JM, Lee TS. Neuronal interactions and their role in solving the stereo correspondence problem,
In Vision in 3D Environments, Ed. Laurence Harris, Michael Jenkin, Cambridge University Press, 2011.
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Lee TS, Stepleton T, Potetz B, Samonds JM. Neural coding of scene statistics for surface and object inference,
In Object Categorization: perspectives from human and machine vision, Ed. Sven Dickinson, Ales Leonardis, Bernt Schiele, Michael Tarr, Cambridge University Press, 2008.
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